Partial orientation and local structural learning of causal networks for prediction

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Jianxin Yin, You Zhou, Changzhang Wang, Ping He, Cheng Zheng, Zhi Geng ;
Proceedings of the Workshop on the Causation and Prediction Challenge at WCCI 2008, PMLR 3:93-105, 2008.

Abstract

For a prediction problem of a given target feature in a large causal network under external interventions, we propose in this paper two partial orientation and local structural learning (POLSL) approaches, Local-Graph and PCD-by-PCD (where PCD denotes Parents, Children and some Descendants). The POLSL approaches are used to discover the local structure of the target and to orient edges connected to the target without discovering a global causal network. Thus they can greatly reduce computational complexity of structural learning and improve power of statistical tests. This approach is stimulated by the challenge problems proposed in IEEE World Congress on Computational Intelligence (WCCI2008) competition workshop. For the cases with and without external interventions, we select different feature sets to build prediction models. We apply the L1 penalized logistic regression model to the prediction. For the case with noise and calibrant features in microarray data, we propose a two-stage filter to correct global and local patterns of noise.

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