Causal discovery under a confounder blanket

David S. Watson, Ricardo Silva
Proceedings of the Thirty-Eighth Conference on Uncertainty in Artificial Intelligence, PMLR 180:2096-2106, 2022.

Abstract

Inferring causal relationships from observational data is rarely straightforward, but the problem is especially difficult in high dimensions. For these applications, causal discovery algorithms typically require parametric restrictions or extreme sparsity constraints. We relax these assumptions and focus on an important but more specialized problem, namely recovering the causal order among a subgraph of variables known to descend from some (possibly large) set of confounding covariates, i.e. a $\textit{confounder blanket}$. This is useful in many settings, for example when studying a dynamic biomolecular subsystem with genetic data providing background information. Under a structural assumption called the $\textit{confounder blanket principle}$, which we argue is essential for tractable causal discovery in high dimensions, our method accommodates graphs of low or high sparsity while maintaining polynomial time complexity. We present a structure learning algorithm that is provably sound and complete with respect to a so-called $\textit{lazy oracle}$. We design inference procedures with finite sample error control for linear and nonlinear systems, and demonstrate our approach on a range of simulated and real-world datasets. An accompanying $\texttt{R}$ package, $\texttt{cbl}$, is available from $\texttt{CRAN}$.

Cite this Paper

BibTeX
@InProceedings{pmlr-v180-watson22a, title = {Causal discovery under a confounder blanket}, author = {Watson, David S. and Silva, Ricardo}, booktitle = {Proceedings of the Thirty-Eighth Conference on Uncertainty in Artificial Intelligence}, pages = {2096--2106}, year = {2022}, editor = {Cussens, James and Zhang, Kun}, volume = {180}, series = {Proceedings of Machine Learning Research}, month = {01--05 Aug}, publisher = {PMLR}, pdf = {https://proceedings.mlr.press/v180/watson22a/watson22a.pdf}, url = {https://proceedings.mlr.press/v180/watson22a.html}, abstract = {Inferring causal relationships from observational data is rarely straightforward, but the problem is especially difficult in high dimensions. For these applications, causal discovery algorithms typically require parametric restrictions or extreme sparsity constraints. We relax these assumptions and focus on an important but more specialized problem, namely recovering the causal order among a subgraph of variables known to descend from some (possibly large) set of confounding covariates, i.e. a $\textit{confounder blanket}$. This is useful in many settings, for example when studying a dynamic biomolecular subsystem with genetic data providing background information. Under a structural assumption called the $\textit{confounder blanket principle}$, which we argue is essential for tractable causal discovery in high dimensions, our method accommodates graphs of low or high sparsity while maintaining polynomial time complexity. We present a structure learning algorithm that is provably sound and complete with respect to a so-called $\textit{lazy oracle}$. We design inference procedures with finite sample error control for linear and nonlinear systems, and demonstrate our approach on a range of simulated and real-world datasets. An accompanying $\texttt{R}$ package, $\texttt{cbl}$, is available from $\texttt{CRAN}$.} }
Endnote
%0 Conference Paper %T Causal discovery under a confounder blanket %A David S. Watson %A Ricardo Silva %B Proceedings of the Thirty-Eighth Conference on Uncertainty in Artificial Intelligence %C Proceedings of Machine Learning Research %D 2022 %E James Cussens %E Kun Zhang %F pmlr-v180-watson22a %I PMLR %P 2096--2106 %U https://proceedings.mlr.press/v180/watson22a.html %V 180 %X Inferring causal relationships from observational data is rarely straightforward, but the problem is especially difficult in high dimensions. For these applications, causal discovery algorithms typically require parametric restrictions or extreme sparsity constraints. We relax these assumptions and focus on an important but more specialized problem, namely recovering the causal order among a subgraph of variables known to descend from some (possibly large) set of confounding covariates, i.e. a $\textit{confounder blanket}$. This is useful in many settings, for example when studying a dynamic biomolecular subsystem with genetic data providing background information. Under a structural assumption called the $\textit{confounder blanket principle}$, which we argue is essential for tractable causal discovery in high dimensions, our method accommodates graphs of low or high sparsity while maintaining polynomial time complexity. We present a structure learning algorithm that is provably sound and complete with respect to a so-called $\textit{lazy oracle}$. We design inference procedures with finite sample error control for linear and nonlinear systems, and demonstrate our approach on a range of simulated and real-world datasets. An accompanying $\texttt{R}$ package, $\texttt{cbl}$, is available from $\texttt{CRAN}$.
APA
Watson, D.S. & Silva, R.. (2022). Causal discovery under a confounder blanket. Proceedings of the Thirty-Eighth Conference on Uncertainty in Artificial Intelligence, in Proceedings of Machine Learning Research 180:2096-2106 Available from https://proceedings.mlr.press/v180/watson22a.html.

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