E(3) x SO(3)-Equivariant Networks for Spherical Deconvolution in Diffusion MRI

Axel Elaldi, Guido Gerig, Neel Dey
Medical Imaging with Deep Learning, PMLR 227:301-319, 2024.

Abstract

We present Roto-Translation Equivariant Spherical Deconvolution (RT-ESD), an $E(3)\times SO(3)$ equivariant framework for sparse deconvolution of volumes where each voxel contains a spherical signal. Such 6D data naturally arises in diffusion MRI (dMRI), a medical imaging modality widely used to measure microstructure and structural connectivity. As each dMRI voxel is typically a mixture of various overlapping structures, there is a need for blind deconvolution to recover crossing anatomical structures such as white matter tracts. Existing dMRI work takes either an iterative or deep learning approach to sparse spherical deconvolution, yet it typically does not account for relationships between neighboring measurements. This work constructs equivariant deep learning layers which respect to symmetries of spatial rotations, reflections, and translations, alongside the symmetries of voxelwise spherical rotations. As a result, RT-ESD improves on previous work across several tasks including fiber recovery on the DiSCo dataset, deconvolution-derived partial volume estimation on real-world in vivo human brain dMRI, and improved downstream reconstruction of fiber tractograms on the Tractometer dataset. The code will be released.

Cite this Paper


BibTeX
@InProceedings{pmlr-v227-elaldi24a, title = {E(3) x SO(3)-Equivariant Networks for Spherical Deconvolution in Diffusion MRI}, author = {Elaldi, Axel and Gerig, Guido and Dey, Neel}, booktitle = {Medical Imaging with Deep Learning}, pages = {301--319}, year = {2024}, editor = {Oguz, Ipek and Noble, Jack and Li, Xiaoxiao and Styner, Martin and Baumgartner, Christian and Rusu, Mirabela and Heinmann, Tobias and Kontos, Despina and Landman, Bennett and Dawant, Benoit}, volume = {227}, series = {Proceedings of Machine Learning Research}, month = {10--12 Jul}, publisher = {PMLR}, pdf = {https://proceedings.mlr.press/v227/elaldi24a/elaldi24a.pdf}, url = {https://proceedings.mlr.press/v227/elaldi24a.html}, abstract = {We present Roto-Translation Equivariant Spherical Deconvolution (RT-ESD), an $E(3)\times SO(3)$ equivariant framework for sparse deconvolution of volumes where each voxel contains a spherical signal. Such 6D data naturally arises in diffusion MRI (dMRI), a medical imaging modality widely used to measure microstructure and structural connectivity. As each dMRI voxel is typically a mixture of various overlapping structures, there is a need for blind deconvolution to recover crossing anatomical structures such as white matter tracts. Existing dMRI work takes either an iterative or deep learning approach to sparse spherical deconvolution, yet it typically does not account for relationships between neighboring measurements. This work constructs equivariant deep learning layers which respect to symmetries of spatial rotations, reflections, and translations, alongside the symmetries of voxelwise spherical rotations. As a result, RT-ESD improves on previous work across several tasks including fiber recovery on the DiSCo dataset, deconvolution-derived partial volume estimation on real-world in vivo human brain dMRI, and improved downstream reconstruction of fiber tractograms on the Tractometer dataset. The code will be released.} }
Endnote
%0 Conference Paper %T E(3) x SO(3)-Equivariant Networks for Spherical Deconvolution in Diffusion MRI %A Axel Elaldi %A Guido Gerig %A Neel Dey %B Medical Imaging with Deep Learning %C Proceedings of Machine Learning Research %D 2024 %E Ipek Oguz %E Jack Noble %E Xiaoxiao Li %E Martin Styner %E Christian Baumgartner %E Mirabela Rusu %E Tobias Heinmann %E Despina Kontos %E Bennett Landman %E Benoit Dawant %F pmlr-v227-elaldi24a %I PMLR %P 301--319 %U https://proceedings.mlr.press/v227/elaldi24a.html %V 227 %X We present Roto-Translation Equivariant Spherical Deconvolution (RT-ESD), an $E(3)\times SO(3)$ equivariant framework for sparse deconvolution of volumes where each voxel contains a spherical signal. Such 6D data naturally arises in diffusion MRI (dMRI), a medical imaging modality widely used to measure microstructure and structural connectivity. As each dMRI voxel is typically a mixture of various overlapping structures, there is a need for blind deconvolution to recover crossing anatomical structures such as white matter tracts. Existing dMRI work takes either an iterative or deep learning approach to sparse spherical deconvolution, yet it typically does not account for relationships between neighboring measurements. This work constructs equivariant deep learning layers which respect to symmetries of spatial rotations, reflections, and translations, alongside the symmetries of voxelwise spherical rotations. As a result, RT-ESD improves on previous work across several tasks including fiber recovery on the DiSCo dataset, deconvolution-derived partial volume estimation on real-world in vivo human brain dMRI, and improved downstream reconstruction of fiber tractograms on the Tractometer dataset. The code will be released.
APA
Elaldi, A., Gerig, G. & Dey, N.. (2024). E(3) x SO(3)-Equivariant Networks for Spherical Deconvolution in Diffusion MRI. Medical Imaging with Deep Learning, in Proceedings of Machine Learning Research 227:301-319 Available from https://proceedings.mlr.press/v227/elaldi24a.html.

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