Aligning Transformers with Weisfeiler-Leman

Luis Müller, Christopher Morris
Proceedings of the 41st International Conference on Machine Learning, PMLR 235:36654-36704, 2024.

Abstract

Graph neural network architectures aligned with the $k$-dimensional Weisfeiler–Leman ($k$-WL) hierarchy offer theoretically well-understood expressive power. However, these architectures often fail to deliver state-of-the-art predictive performance on real-world graphs, limiting their practical utility. While recent works aligning graph transformer architectures with the $k$-WL hierarchy have shown promising empirical results, employing transformers for higher orders of $k$ remains challenging due to a prohibitive runtime and memory complexity of self-attention as well as impractical architectural assumptions, such as an infeasible number of attention heads. Here, we advance the alignment of transformers with the $k$-WL hierarchy, showing stronger expressivity results for each $k$, making them more feasible in practice. In addition, we develop a theoretical framework that allows the study of established positional encodings such as Laplacian PEs and SPE. We evaluate our transformers on the large-scale PCQM4Mv2 dataset, showing competitive predictive performance with the state-of-the-art and demonstrating strong downstream performance when fine-tuning them on small-scale molecular datasets.

Cite this Paper

BibTeX
@InProceedings{pmlr-v235-muller24c, title = {Aligning Transformers with Weisfeiler-Leman}, author = {M\"{u}ller, Luis and Morris, Christopher}, booktitle = {Proceedings of the 41st International Conference on Machine Learning}, pages = {36654--36704}, year = {2024}, editor = {Salakhutdinov, Ruslan and Kolter, Zico and Heller, Katherine and Weller, Adrian and Oliver, Nuria and Scarlett, Jonathan and Berkenkamp, Felix}, volume = {235}, series = {Proceedings of Machine Learning Research}, month = {21--27 Jul}, publisher = {PMLR}, pdf = {https://raw.githubusercontent.com/mlresearch/v235/main/assets/muller24c/muller24c.pdf}, url = {https://proceedings.mlr.press/v235/muller24c.html}, abstract = {Graph neural network architectures aligned with the $k$-dimensional Weisfeiler–Leman ($k$-WL) hierarchy offer theoretically well-understood expressive power. However, these architectures often fail to deliver state-of-the-art predictive performance on real-world graphs, limiting their practical utility. While recent works aligning graph transformer architectures with the $k$-WL hierarchy have shown promising empirical results, employing transformers for higher orders of $k$ remains challenging due to a prohibitive runtime and memory complexity of self-attention as well as impractical architectural assumptions, such as an infeasible number of attention heads. Here, we advance the alignment of transformers with the $k$-WL hierarchy, showing stronger expressivity results for each $k$, making them more feasible in practice. In addition, we develop a theoretical framework that allows the study of established positional encodings such as Laplacian PEs and SPE. We evaluate our transformers on the large-scale PCQM4Mv2 dataset, showing competitive predictive performance with the state-of-the-art and demonstrating strong downstream performance when fine-tuning them on small-scale molecular datasets.} }
Endnote
%0 Conference Paper %T Aligning Transformers with Weisfeiler-Leman %A Luis Müller %A Christopher Morris %B Proceedings of the 41st International Conference on Machine Learning %C Proceedings of Machine Learning Research %D 2024 %E Ruslan Salakhutdinov %E Zico Kolter %E Katherine Heller %E Adrian Weller %E Nuria Oliver %E Jonathan Scarlett %E Felix Berkenkamp %F pmlr-v235-muller24c %I PMLR %P 36654--36704 %U https://proceedings.mlr.press/v235/muller24c.html %V 235 %X Graph neural network architectures aligned with the $k$-dimensional Weisfeiler–Leman ($k$-WL) hierarchy offer theoretically well-understood expressive power. However, these architectures often fail to deliver state-of-the-art predictive performance on real-world graphs, limiting their practical utility. While recent works aligning graph transformer architectures with the $k$-WL hierarchy have shown promising empirical results, employing transformers for higher orders of $k$ remains challenging due to a prohibitive runtime and memory complexity of self-attention as well as impractical architectural assumptions, such as an infeasible number of attention heads. Here, we advance the alignment of transformers with the $k$-WL hierarchy, showing stronger expressivity results for each $k$, making them more feasible in practice. In addition, we develop a theoretical framework that allows the study of established positional encodings such as Laplacian PEs and SPE. We evaluate our transformers on the large-scale PCQM4Mv2 dataset, showing competitive predictive performance with the state-of-the-art and demonstrating strong downstream performance when fine-tuning them on small-scale molecular datasets.
APA
Müller, L. & Morris, C.. (2024). Aligning Transformers with Weisfeiler-Leman. Proceedings of the 41st International Conference on Machine Learning, in Proceedings of Machine Learning Research 235:36654-36704 Available from https://proceedings.mlr.press/v235/muller24c.html.

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