NeuroTree: Hierarchical Functional Brain Pathway Decoding for Mental Health Disorders

Jun-En Ding, Dongsheng Luo, Chenwei Wu, Feng Liu
Proceedings of the 42nd International Conference on Machine Learning, PMLR 267:13845-13869, 2025.

Abstract

Mental disorders are among the most widespread diseases globally. Analyzing functional brain networks through functional magnetic resonance imaging (fMRI) is crucial for understanding mental disorder behaviors. Although existing fMRI-based graph neural networks (GNNs) have demonstrated significant potential in brain network feature extraction, they often fail to characterize complex relationships between brain regions and demographic information in mental disorders. To overcome these limitations, we propose a learnable NeuroTree framework that integrates a $k$-hop AGE-GCN with neural ordinary differential equations (ODEs) and contrastive masked functional connectivity (CMFC) to enhance similarities and dissimilarities of brain region distance. Furthermore, NeuroTree effectively decodes fMRI network features into tree structures, which improves the capture of high-order brain regional pathway features and enables the identification of hierarchical neural behavioral patterns essential for understanding disease-related brain subnetworks. Our empirical evaluations demonstrate that NeuroTree achieves state-of-the-art performance across two distinct mental disorder datasets. It provides valuable insights into age-related deterioration patterns, elucidating their underlying neural mechanisms. The code and datasets are available at https://github.com/Ding1119/NeuroTree.

Cite this Paper

BibTeX
@InProceedings{pmlr-v267-ding25c, title = {{N}euro{T}ree: Hierarchical Functional Brain Pathway Decoding for Mental Health Disorders}, author = {Ding, Jun-En and Luo, Dongsheng and Wu, Chenwei and Liu, Feng}, booktitle = {Proceedings of the 42nd International Conference on Machine Learning}, pages = {13845--13869}, year = {2025}, editor = {Singh, Aarti and Fazel, Maryam and Hsu, Daniel and Lacoste-Julien, Simon and Berkenkamp, Felix and Maharaj, Tegan and Wagstaff, Kiri and Zhu, Jerry}, volume = {267}, series = {Proceedings of Machine Learning Research}, month = {13--19 Jul}, publisher = {PMLR}, pdf = {https://raw.githubusercontent.com/mlresearch/v267/main/assets/ding25c/ding25c.pdf}, url = {https://proceedings.mlr.press/v267/ding25c.html}, abstract = {Mental disorders are among the most widespread diseases globally. Analyzing functional brain networks through functional magnetic resonance imaging (fMRI) is crucial for understanding mental disorder behaviors. Although existing fMRI-based graph neural networks (GNNs) have demonstrated significant potential in brain network feature extraction, they often fail to characterize complex relationships between brain regions and demographic information in mental disorders. To overcome these limitations, we propose a learnable NeuroTree framework that integrates a $k$-hop AGE-GCN with neural ordinary differential equations (ODEs) and contrastive masked functional connectivity (CMFC) to enhance similarities and dissimilarities of brain region distance. Furthermore, NeuroTree effectively decodes fMRI network features into tree structures, which improves the capture of high-order brain regional pathway features and enables the identification of hierarchical neural behavioral patterns essential for understanding disease-related brain subnetworks. Our empirical evaluations demonstrate that NeuroTree achieves state-of-the-art performance across two distinct mental disorder datasets. It provides valuable insights into age-related deterioration patterns, elucidating their underlying neural mechanisms. The code and datasets are available at https://github.com/Ding1119/NeuroTree.} }
Endnote
%0 Conference Paper %T NeuroTree: Hierarchical Functional Brain Pathway Decoding for Mental Health Disorders %A Jun-En Ding %A Dongsheng Luo %A Chenwei Wu %A Feng Liu %B Proceedings of the 42nd International Conference on Machine Learning %C Proceedings of Machine Learning Research %D 2025 %E Aarti Singh %E Maryam Fazel %E Daniel Hsu %E Simon Lacoste-Julien %E Felix Berkenkamp %E Tegan Maharaj %E Kiri Wagstaff %E Jerry Zhu %F pmlr-v267-ding25c %I PMLR %P 13845--13869 %U https://proceedings.mlr.press/v267/ding25c.html %V 267 %X Mental disorders are among the most widespread diseases globally. Analyzing functional brain networks through functional magnetic resonance imaging (fMRI) is crucial for understanding mental disorder behaviors. Although existing fMRI-based graph neural networks (GNNs) have demonstrated significant potential in brain network feature extraction, they often fail to characterize complex relationships between brain regions and demographic information in mental disorders. To overcome these limitations, we propose a learnable NeuroTree framework that integrates a $k$-hop AGE-GCN with neural ordinary differential equations (ODEs) and contrastive masked functional connectivity (CMFC) to enhance similarities and dissimilarities of brain region distance. Furthermore, NeuroTree effectively decodes fMRI network features into tree structures, which improves the capture of high-order brain regional pathway features and enables the identification of hierarchical neural behavioral patterns essential for understanding disease-related brain subnetworks. Our empirical evaluations demonstrate that NeuroTree achieves state-of-the-art performance across two distinct mental disorder datasets. It provides valuable insights into age-related deterioration patterns, elucidating their underlying neural mechanisms. The code and datasets are available at https://github.com/Ding1119/NeuroTree.
APA
Ding, J., Luo, D., Wu, C. & Liu, F.. (2025). NeuroTree: Hierarchical Functional Brain Pathway Decoding for Mental Health Disorders. Proceedings of the 42nd International Conference on Machine Learning, in Proceedings of Machine Learning Research 267:13845-13869 Available from https://proceedings.mlr.press/v267/ding25c.html.

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