Mondrian Predictive Systems for Censored Data

Henrik Bostrom, Henrik Linusson, Anders Vesterberg
Proceedings of the Twelfth Symposium on Conformal and Probabilistic Prediction with Applications, PMLR 204:399-412, 2023.

Abstract

Conformal predictive systems output predictions in the form of well-calibrated cumulative distribution functions (conformal predictive distributions). In this paper, we apply conformal predictive systems to the problem of time-to-event prediction, where the conformal predictive distribution for a test object may be used to obtain the expected time until an event occurs, as well as p-values for an event to take place earlier (or later) than some specified time points. Specifically, we target right-censored time-to-event prediction tasks, i.e., situations in which the true time-to-event for a particular training example may be unknown due to observation of the example ending before any event occurs. By leveraging the Kaplan-Meier estimator, we develop a procedure for constructing Mondrian predictive systems that are able to produce well-calibrated cumulative distribution functions for right-censored time-to-event prediction tasks. We show that the proposed procedure is guaranteed to produce conservatively valid predictive distributions, and provide empirical support using simulated censoring on benchmark data. The proposed approach is contrasted with established techniques for survival analysis, including random survival forests and censored quantile regression forests, using both synthetic and non-synthetic censoring.

Cite this Paper


BibTeX
@InProceedings{pmlr-v204-bostrom23a, title = {Mondrian Predictive Systems for Censored Data}, author = {Bostrom, Henrik and Linusson, Henrik and Vesterberg, Anders}, booktitle = {Proceedings of the Twelfth Symposium on Conformal and Probabilistic Prediction with Applications}, pages = {399--412}, year = {2023}, editor = {Papadopoulos, Harris and Nguyen, Khuong An and Boström, Henrik and Carlsson, Lars}, volume = {204}, series = {Proceedings of Machine Learning Research}, month = {13--15 Sep}, publisher = {PMLR}, pdf = {https://proceedings.mlr.press/v204/bostrom23a/bostrom23a.pdf}, url = {https://proceedings.mlr.press/v204/bostrom23a.html}, abstract = {Conformal predictive systems output predictions in the form of well-calibrated cumulative distribution functions (conformal predictive distributions). In this paper, we apply conformal predictive systems to the problem of time-to-event prediction, where the conformal predictive distribution for a test object may be used to obtain the expected time until an event occurs, as well as p-values for an event to take place earlier (or later) than some specified time points. Specifically, we target right-censored time-to-event prediction tasks, i.e., situations in which the true time-to-event for a particular training example may be unknown due to observation of the example ending before any event occurs. By leveraging the Kaplan-Meier estimator, we develop a procedure for constructing Mondrian predictive systems that are able to produce well-calibrated cumulative distribution functions for right-censored time-to-event prediction tasks. We show that the proposed procedure is guaranteed to produce conservatively valid predictive distributions, and provide empirical support using simulated censoring on benchmark data. The proposed approach is contrasted with established techniques for survival analysis, including random survival forests and censored quantile regression forests, using both synthetic and non-synthetic censoring.} }
Endnote
%0 Conference Paper %T Mondrian Predictive Systems for Censored Data %A Henrik Bostrom %A Henrik Linusson %A Anders Vesterberg %B Proceedings of the Twelfth Symposium on Conformal and Probabilistic Prediction with Applications %C Proceedings of Machine Learning Research %D 2023 %E Harris Papadopoulos %E Khuong An Nguyen %E Henrik Boström %E Lars Carlsson %F pmlr-v204-bostrom23a %I PMLR %P 399--412 %U https://proceedings.mlr.press/v204/bostrom23a.html %V 204 %X Conformal predictive systems output predictions in the form of well-calibrated cumulative distribution functions (conformal predictive distributions). In this paper, we apply conformal predictive systems to the problem of time-to-event prediction, where the conformal predictive distribution for a test object may be used to obtain the expected time until an event occurs, as well as p-values for an event to take place earlier (or later) than some specified time points. Specifically, we target right-censored time-to-event prediction tasks, i.e., situations in which the true time-to-event for a particular training example may be unknown due to observation of the example ending before any event occurs. By leveraging the Kaplan-Meier estimator, we develop a procedure for constructing Mondrian predictive systems that are able to produce well-calibrated cumulative distribution functions for right-censored time-to-event prediction tasks. We show that the proposed procedure is guaranteed to produce conservatively valid predictive distributions, and provide empirical support using simulated censoring on benchmark data. The proposed approach is contrasted with established techniques for survival analysis, including random survival forests and censored quantile regression forests, using both synthetic and non-synthetic censoring.
APA
Bostrom, H., Linusson, H. & Vesterberg, A.. (2023). Mondrian Predictive Systems for Censored Data. Proceedings of the Twelfth Symposium on Conformal and Probabilistic Prediction with Applications, in Proceedings of Machine Learning Research 204:399-412 Available from https://proceedings.mlr.press/v204/bostrom23a.html.

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