Volume 8: Machine Learning in Systems Biology, 5-6 September 2009, Ljubljana, Slovenia

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Editors: Sašo Džeroski, Pierre Guerts, Juho Rousu

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Contents:

Preface

Accepted Papers

Proceedings of the Third International Workshop on Machine Learning in Systems Biology: Revised Selected Papers

Sašo Džeroski, Pierre Geurts, Juho Rousu ; PMLR 8:1-2

A comparison of AUC estimators in small-sample studies

Antti Airola, Tapio Pahikkala, Willem Waegeman, Bernard De Baets, Tapio Salakoski ; PMLR 8:3-13

Hierarchical Cost-Sensitive Algorithms for Genome-Wide Gene Function Prediction

Nicolò Cesa-Bianchi, Giorgio Valentini ; PMLR 8:14-29

Evaluation of a Bayesian model-based approach in GA studies

Gábor Hullám, Péter Antal, Csaba Szalai, András Falus ; PMLR 8:30-43

Evaluation of Signaling Cascades Based on the Weights from Microarray and ChIP-seq Data

Zerrin Isik, Volkan Atalay, Rengul Cetin-Atalay ; PMLR 8:44-54

On utility of gene set signatures in gene expression-based cancer class prediction

Minca Mramor, Marko Toplak, Gregor Leban, Tomaž Curk, Janez Demšar, Blaž Zupan ; PMLR 8:55-64

Accuracy-Rejection Curves (ARCs) for Comparing Classification Methods with a Reject Option

Malik Sajjad Ahmed Nadeem, Jean-Daniel Zucker, Blaise Hanczar ; PMLR 8:65-81

Predicting the functions of proteins in Protein-Protein Interaction networks from global information

Hossein Rahmani, Hendrik Blockeel, Andreas Bender ; PMLR 8:82-97

Simple ensemble methods are competitive with state-of-the-art data integration methods for gene function prediction

Matteo Ré, Giorgio Valentini ; PMLR 8:98-111

Event based text mining for integrated network construction

Yvan Saeys, Sofie Van Landeghem, Yves Van Peer ; PMLR 8:112-121

Evaluation Method for Feature Rankings and their Aggregations for Biomarker Discovery

Ivica Slavkov, Bernard Ženko, Sašo Džeroski ; PMLR 8:122-135

A Subgroup Discovery Approach for Relating Chemical Structure and Phenotype Data in Chemical Genomics

Lan Umek, Petra Kaferle, Mojca Mattiazzi, Aleš Erjavec, Črtomir Gorup, Tomaž Curk, Uroš Petrovič, Blaž Zupan ; PMLR 8:136-144

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