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Volume 8: Machine Learning in Systems Biology, 5-6 September 2009, Ljubljana, Slovenia

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Editors: Sašo Džeroski, Pierre Guerts, Juho Rousu

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Contents:

Preface

Accepted Papers

Proceedings of the Third International Workshop on Machine Learning in Systems Biology: Revised Selected Papers

Sašo Džeroski,  Pierre Geurts,  Juho Rousu ; PMLR 8:1-2

A comparison of AUC estimators in small-sample studies

Antti Airola,  Tapio Pahikkala,  Willem Waegeman,  Bernard De Baets,  Tapio Salakoski ; PMLR 8:3-13

Hierarchical Cost-Sensitive Algorithms for Genome-Wide Gene Function Prediction

Nicolò Cesa-Bianchi,  Giorgio Valentini ; PMLR 8:14-29

Evaluation of a Bayesian model-based approach in GA studies

Gábor Hullám,  Péter Antal,  Csaba Szalai,  András Falus ; PMLR 8:30-43

Evaluation of Signaling Cascades Based on the Weights from Microarray and ChIP-seq Data

Zerrin Isik,  Volkan Atalay,  Rengul Cetin-Atalay ; PMLR 8:44-54

On utility of gene set signatures in gene expression-based cancer class prediction

Minca Mramor,  Marko Toplak,  Gregor Leban,  Tomaž Curk,  Janez Demšar,  Blaž Zupan ; PMLR 8:55-64

Accuracy-Rejection Curves (ARCs) for Comparing Classification Methods with a Reject Option

Malik Sajjad Ahmed Nadeem,  Jean-Daniel Zucker,  Blaise Hanczar ; PMLR 8:65-81

Predicting the functions of proteins in Protein-Protein Interaction networks from global information

Hossein Rahmani,  Hendrik Blockeel,  Andreas Bender ; PMLR 8:82-97

Simple ensemble methods are competitive with state-of-the-art data integration methods for gene function prediction

Matteo Ré,  Giorgio Valentini ; PMLR 8:98-111

Event based text mining for integrated network construction

Yvan Saeys,  Sofie Van Landeghem,  Yves Van Peer ; PMLR 8:112-121

Evaluation Method for Feature Rankings and their Aggregations for Biomarker Discovery

Ivica Slavkov,  Bernard Ženko,  Sašo Džeroski ; PMLR 8:122-135

A Subgroup Discovery Approach for Relating Chemical Structure and Phenotype Data in Chemical Genomics

Lan Umek,  Petra Kaferle,  Mojca Mattiazzi,  Aleš Erjavec,  Črtomir Gorup,  Tomaž Curk,  Uroš Petrovič,  Blaž Zupan ; PMLR 8:136-144

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