Proceedings of the Third International Workshop on Machine Learning in Systems Biology: Revised Selected Papers

Sašo Džeroski, Pierre Geurts, Juho Rousu; Proceedings of the third International Workshop on Machine Learning in Systems Biology, PMLR 8:1-2

[abs][Download PDF]

A comparison of AUC estimators in small-sample studies

Antti Airola, Tapio Pahikkala, Willem Waegeman, Bernard De Baets, Tapio Salakoski; Proceedings of the third International Workshop on Machine Learning in Systems Biology, PMLR 8:3-13

[abs][Download PDF]

Hierarchical Cost-Sensitive Algorithms for Genome-Wide Gene Function Prediction

Nicolò Cesa-Bianchi, Giorgio Valentini; Proceedings of the third International Workshop on Machine Learning in Systems Biology, PMLR 8:14-29

[abs][Download PDF]

Evaluation of a Bayesian model-based approach in GA studies

Gábor Hullám, Péter Antal, Csaba Szalai, András Falus; Proceedings of the third International Workshop on Machine Learning in Systems Biology, PMLR 8:30-43

[abs][Download PDF]

Evaluation of Signaling Cascades Based on the Weights from Microarray and ChIP-seq Data

Zerrin Isik, Volkan Atalay, Rengul Cetin-Atalay; Proceedings of the third International Workshop on Machine Learning in Systems Biology, PMLR 8:44-54

[abs][Download PDF]

On utility of gene set signatures in gene expression-based cancer class prediction

Minca Mramor, Marko Toplak, Gregor Leban, Tomaž Curk, Janez Demšar, Blaž Zupan; Proceedings of the third International Workshop on Machine Learning in Systems Biology, PMLR 8:55-64

[abs][Download PDF]

Accuracy-Rejection Curves (ARCs) for Comparing Classification Methods with a Reject Option

Malik Sajjad Ahmed Nadeem, Jean-Daniel Zucker, Blaise Hanczar; Proceedings of the third International Workshop on Machine Learning in Systems Biology, PMLR 8:65-81

[abs][Download PDF]

Predicting the functions of proteins in Protein-Protein Interaction networks from global information

Hossein Rahmani, Hendrik Blockeel, Andreas Bender; Proceedings of the third International Workshop on Machine Learning in Systems Biology, PMLR 8:82-97

[abs][Download PDF]

Simple ensemble methods are competitive with state-of-the-art data integration methods for gene function prediction

Matteo Ré, Giorgio Valentini; Proceedings of the third International Workshop on Machine Learning in Systems Biology, PMLR 8:98-111

[abs][Download PDF]

Event based text mining for integrated network construction

Yvan Saeys, Sofie Van Landeghem, Yves Van Peer; Proceedings of the third International Workshop on Machine Learning in Systems Biology, PMLR 8:112-121

[abs][Download PDF]

Evaluation Method for Feature Rankings and their Aggregations for Biomarker Discovery

Ivica Slavkov, Bernard Ženko, Sašo Džeroski; Proceedings of the third International Workshop on Machine Learning in Systems Biology, PMLR 8:122-135

[abs][Download PDF]

A Subgroup Discovery Approach for Relating Chemical Structure and Phenotype Data in Chemical Genomics

Lan Umek, Petra Kaferle, Mojca Mattiazzi, Aleš Erjavec, Črtomir Gorup, Tomaž Curk, Uroš Petrovič, Blaž Zupan; Proceedings of the third International Workshop on Machine Learning in Systems Biology, PMLR 8:136-144

[abs][Download PDF]